Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-AITCGQVSSAIAPCLSYARGTGP-APSASCCSGVRNLKSAASTAADRRAACNCLKNAARGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSR
2RKN Chain:A ((1-77))
AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQH--------ADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANA------PTC--
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22154 for 517 contacts (-42.9/contact) +
2D Compatibility (PS) -7946 + (NN) -2507 + (LL) 1084
1D Compatibility (HY) -2400 + (ID) 900
Total energy: -34823.0 ( -67.36 by residue)
QMean score : 0.270
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: