Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
TTVESFGEVAQSC--VVTELAPCLPAMTTAGD--PTTECCDKLVE-QKPCLCGYIRNPAYSMY-VTSPNGRKVLDFCKVPFP-SC
2RKN Chain:A ((1-77))
--------AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28223 for 427 contacts (-66.1/contact) +
2D Compatibility (PS) -6714 + (NN) -334 + (LL) 436
1D Compatibility (HY) -3200 + (ID) 950
Total energy: -38985.0 ( -91.30 by residue)
QMean score : 0.232
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: