Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--LTCPEVSKALVPCVTYLATGSSF---VHCCTQIRLLNSKANTTSDRQGVCRCLTSLAAQFQRRHRLNFNLVKQLPGKCNVNIRYNITTQNPNCSQVK
2RKN Chain:A ((1-77))
AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQ--------HADFACLCGYKNS---PWLGSFGVDPELASALPKQCGLA-------NAPTC----
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23825 for 479 contacts (-49.7/contact) +
2D Compatibility (PS) -7326 + (NN) -3083 + (LL) 1860
1D Compatibility (HY) -2800 + (ID) 750
Total energy: -35924.0 ( -75.00 by residue)
QMean score : 0.182
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: