Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-AVQCGQVTQLMAPCMPYLSGAPGMTPYGICCNSLRVLAELAATTADRVAACNCVRAAAGAGGFPPVDFTRAAGLPAACGLKINFAISPNMDCNQVTDEP
2RKN Chain:A ((1-77))
AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHAD----------FACLCGYKNSPWLGSFGVDPELASALPKQCG------LANAPTC-------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46694 for 526 contacts (-88.8/contact) +
2D Compatibility (PS) -8002 + (NN) -4743 + (LL) 1844
1D Compatibility (HY) 0 + (ID) 1050
Total energy: -58645.0 ( -111.49 by residue)
QMean score : 0.120
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: