Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACDATNNMGKLLPCRQAAVKNG-KDPKQLAGCCDAVKPFSGSKDAADCLCQSLLAAQKVDKTVDLHSAIAIPAKCGIPVQANLKCNGMAVPQH
2RKN Chain:A ((8-74))
------SQDELNECKPAVSKENPTSP--SQPCCTALQHA----D-FACLCGYKNSPWLGSFGVDPELASALPKQCGLANA-------------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21558 for 403 contacts (-53.5/contact) +
2D Compatibility (PS) -6736 + (NN) -2382 + (LL) 1080
1D Compatibility (HY) -400 + (ID) 950
Total energy: -30946.0 ( -76.79 by residue)
QMean score : 0.258
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: