Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------DPDQQPPCNTFMS---VLSCQSATMSEST---------------------MPSPACCAALRKFHDADCLCQVLLSARSAAAIAN------VPFNLKAALEIPMKCALRTVSAPPGYSCGGMVVPRSPPPTST
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV-RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVR---------------CMRQTRTN-
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26884 for 646 contacts (-41.6/contact) +
2D Compatibility (PS) -9245 + (NN) -8403 + (LL) 372
1D Compatibility (HY) -400 + (ID) 700
Total energy: -45260.0 ( -70.06 by residue)
QMean score : 0.311
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: