Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--ADCKEERRVAINACKPILYG---KDPTPACCERIRVTHIECVCPVITPKLAAL--VDVNRMVRLIEGCGRNVPRHYKCGSITTP
2RKN Chain:A ((1-77))
AIDLCGMS-QDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANA--PTC------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48055 for 470 contacts (-102.2/contact) +
2D Compatibility (PS) -7084 + (NN) -1752 + (LL) 212
1D Compatibility (HY) -2000 + (ID) 800
Total energy: -59479.0 ( -126.55 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: