Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DTSPSQCKEERNLLVNACRPVLYGQN---PSADCCQRVRVSHVECVCPYVSTKTAAIIEVLGVPKAVKKIEGCGRTVPRKFKCGSITTP
2RKN Chain:A ((1-77))
--AIDLCGMS-QDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGV-DPELASALPKQCGLANA--PTC------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26002 for 499 contacts (-52.1/contact) +
2D Compatibility (PS) -7497 + (NN) -2622 + (LL) 384
1D Compatibility (HY) -1600 + (ID) 850
Total energy: -38187.0 ( -76.53 by residue)
QMean score : 0.379
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: