Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--ATCGQLIDSLIPCITYLQGG--PGPSAACCGGVKKLNAAANTGPARKAACNCLKSAAGTIARLNNNQAAALPGKCGVKIPYKFSTSTNCNSIRF
2RKN Chain:A ((1-77))
AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHAD--------FACLCGYKNSPWLGSFGVDPELASALPKQCGLANA------PTC-----
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23383 for 497 contacts (-47.0/contact) +
2D Compatibility (PS) -7638 + (NN) -1788 + (LL) 848
1D Compatibility (HY) -2000 + (ID) 900
Total energy: -34861.0 ( -70.14 by residue)
QMean score : 0.224
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: