Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIVWYELTLFGVLTHIISNVFFPSESDYLSTIKFLGSFAVGFGFRPLGAFIFGYIGDKYGRRKVLLTSVILVSISSTAIAVIPDFKEIGILS-------PILL-------LLCRIVQGTAAGGETSINSAFLIEHSSDKKDLGFLGSMKAFSGALGSITCFLMIAIVKKFTGENYEI-W----GWRLLFYFCSIMGVIGFLTRYIMEES----LAYKTHDQ-----NKSLSNSPFLELIRSYKKAF----------MIAIGLGIAQNAIVYSAIMFYNISVKELILSGIDIKNVVRITVEITFGTSAVLFAILSDKVGRKNVMVLILIALACAGLPAFSLLSYDNHYIVTLTFLLISIPIGASFGIYNSLVC-----ELLPTKVRCTGFSLAHNISAGIFGGISPSICMWLIEKTETELAAGFYLTMCALISLIYVLQIKTEDKKVDW |
| 4JA4 Chain:A ((70-411)) | ----------------------------------------------IGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSA----WPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGV-GLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQ----LLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLM----QEQAEGILRKIMGNTLATQAVQEIKHSLDHGMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEV-----------LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV---AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JA4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -169718 for 1843 contacts (-92.1/contact) +
2D Compatibility (PS) -28199 + (NN) -4738 + (LL) 5004
1D Compatibility (HY) -24000 + (ID) 3650
Total energy: -225301.0 ( -122.25 by residue)
QMean score : 0.109
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