Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDRLKKIHWLLVTNVIALFCIGIVVQYSSAGGKWAPFAIHQLVIFSFFFLLAIAMSFIELDFYLKHAYFFYIAAVISLLVVNFFGLYTMG---ATRWIRIGPISLQPSEFAKVGLILALARYFNKQSVYKMMEFQRLLKALIFIFLPVFLVLKQPNLGTAVIMLFIGASIIFTAIIKRAHLIIYGIISILVIPAIWPSLRSYHKQRILSFLDSSVDPLGIGYNAQQSQIAIGSGGLFGKSFVSGSQTQLGFLPEKHTDFAFAVLSEEWGFLGSMTLIVLYTTLLAIIFSIAYRSKNYFSKLVSIGIFAFFGVHFFINIGMTIGLLPVIGDPLPFLSYGGSTTAASSICIGLLLSSVASMKDLKLKLSISSIERPVV |
1YZ6 Chain:A ((27-103)) | -------------------------------------------------------AFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDP--------RKGHIDLSLRRVTQQQRKAKLQEFKRAQKAENLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGHVPDEWLPVLKEIIDNYVEVPTVTIDAEFEITVPKPNGVEIIKEALIRARDRANKEKDVEVKFTYLGAPRYRIDITAPDYYKAEEVLESIAEEILRVIKEAGGEATLLRKEK-------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YZ6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -58411 for 405 contacts (-144.2/contact) +
2D Compatibility (PS) -7170 + (NN) 5617 + (LL) 13992
1D Compatibility (HY) -2000 + (ID) 1300
Total energy: -49272.0 ( -121.66 by residue)
QMean score : -0.007
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