Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQRSNILEITAGLFVLVFTIFLAFFAINKLSDIKKSYKGCYKIYGFFSNANGIEVGDSVKISGVNIGSITGISLDKATYVARLDMCISKDIKLPIDSSALITSSGVVGSKFVNISPGSGIKLISNGGKIEYTQSEANVGGIIDKILNMFSK
4NG7 Chain:A ((189-246))
-------------------------------------------------ANSVAMGVSEVFSGMQTGVIDGAENNPPTFVAHNYMPVAKNYTL---SGHFITPEMLLYSKVKWDKLTADEQQKILTLAREAQFEQRKLWDAYNQEALAKMK
General information:
TITO was launched using:
RESULT:
Template:
4NG7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2705 for 267 contacts (-10.1/contact) +
2D Compatibility (PS) -6015 + (NN) -1933 + (LL) 4176
1D Compatibility (HY) -3600 + (ID) 1000
Total energy: -11077.0 ( -41.49 by residue)
QMean score : -0.023
(partial model without unconserved sides chains):
PDB file :
Tito_4NG7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NG7-query.scw
PDB file :
Tito_Scwrl_4NG7.pdb
: