Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTDYNINLTDSALKKIHSLVEQEEDKSSILRVAVSGGGCSGFKYNFLMDQIDKNLSLSDDDDDDEFDDEDDDDDESEDYRSRSSFSRKSKDIVINDKDGNPVLMVDNCSVKFLNNSIIDYTENLSGSGFQVKNALAKSQCGCGNSFSV
1NWB Chain:A ((5-101))
-AQQFIFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAM------------------GFDDTVEEGDHVFEY------------------DGVKVV-IDPFSMPYVNGAELDYVVDFMGGGFTIRNP--------------
General information:
TITO was launched using:
RESULT:
Template:
1NWB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17385 for 669 contacts (-26.0/contact) +
2D Compatibility (PS) -10697 + (NN) -6855 + (LL) 2080
1D Compatibility (HY) -10400 + (ID) 1600
Total energy: -44857.0 ( -67.05 by residue)
QMean score : 0.247
(partial model without unconserved sides chains):
PDB file :
Tito_1NWB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NWB-query.scw
PDB file :
Tito_Scwrl_1NWB.pdb
: