Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSYDVIISGGGLLGLITAVGLSNNSVSVAVIEKNNLPRIIDDNRAF---AISQGSRKILEKLGIWQ-FIESEAEPILDICILDENSPITVHYNHKMVSEEPMGYVINSTVI----WNAINNNFLNKLNIYSLHSYRTITCDAGYVEVTLGNNQKLISSLLICAEGKNSKLPGLFSMSIIKFDYKQSSIVFNVKHELHHQNLAVEQFFPGGPFAILPMKSGYTSSIVWTEKSEISKMLMNLSEEEFIIELKKRFGSYLGEVKLDGERKSYPLSFASAKKLYKSRVLLIGDAAHSIHPVAGQGLNLGIRDAESVVRQITAAKAFGIDVGSSYLLKKISRDRCLDNFTMALATDGLNRIFSNRIFCAKTLRNFGLMAVENSKFLKKRFIRHAMGFV |
| 4N9X Chain:A ((21-392)) | -------------------GLQGSGLRIAVLEKQ------GKGHALRVSAINAASECLLRHIGVWENLVAQRVSPYNDMQVWDKDSFGKISFSGEEFGFSHLGHIIENPVIQQVLWQRASQ--LSDITLLSPTSLKQVAWGENEAFITLQDDSMLTARLVVGADGA---------------DYGHHALVANIRTEHPHQSVARQAFHGDGILAFLPLDDPHLCSIVWSLSPEQALVMQSLPVEEFNRQVAMAFDMRLGLCELESERQTFPLMGRYARSFAAHRLVLVGDAAHTIHPLAGQGVNLGFMDVAELIAELKR-----KDIGQHLYLRRYERRRKHSAAVMLASMQGFRELFDGDNPAKKLLRDVGLVLADKLPGIKPTLVRQAMGLH |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4N9X.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -145862 for 2600 contacts (-56.1/contact) +
2D Compatibility (PS) -36088 + (NN) -7409 + (LL) 2912
1D Compatibility (HY) -24800 + (ID) 4900
Total energy: -216147.0 ( -83.13 by residue)
QMean score : 0.354
|
|
|