Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKIENPRENIA---YELVN----NGSKLTNENKQKILELAKKIKKEENIASILKKSGNNAKKILTITVSFNDQEEK
4GDY Chain:A ((181-222))
-EDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNSGRVPTFLSMDVDGRVI
General information:
TITO was launched using:
RESULT:
Template:
4GDY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5921 for 124 contacts (47.8/contact) +
2D Compatibility (PS) -3707 + (NN) -697 + (LL) 208
1D Compatibility (HY) -1200 + (ID) 800
Total energy: -275.0 ( -2.22 by residue)
QMean score : 0.680
(partial model without unconserved sides chains):
PDB file :
Tito_4GDY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GDY-query.scw
PDB file :
Tito_Scwrl_4GDY.pdb
: