Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELNKIAASILLSGLIIMIVSNVVDMLYNPEKYKIEHQTMVATGSNEPQKKIEQVALDIGALMQSASLEKGKSIAK-KCIACHSFDKGGANKVGPNLWNIVGNKKAHLGDSFNYSKAMLEKGGKWGYEELFAFLKSPKDYIKGTRMAFAGISNPQEIADLVSYLRQLSDNQVALPK
4GED Chain:B ((12-112))
-----------------------------------------------------------------GDVERGEKLFKGRAAQCHTATKGGSNGVGPNLFGIV-NRPSGKVEGFTYSKANAESGVIWTPEVLDVYLENPKKFMPGTKMSFAGIKKPQERADVIAYLETLK--------
General information:
TITO was launched using:
RESULT:
Template:
4GED.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36395 for 703 contacts (-51.8/contact) +
2D Compatibility (PS) -10511 + (NN) -2609 + (LL) 5964
1D Compatibility (HY) -6000 + (ID) 2250
Total energy: -51801.0 ( -73.69 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_4GED.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GED-query.scw
PDB file :
Tito_Scwrl_4GED.pdb
: