Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSISSPRINVMLDSVRSASKQLMRDFNE---LQISNVKSADFINKTYSRSKQTIYNCLHDYKQDYGFIFEDDIDQEAKEKDYTWFIMPIEGRENFSSRMVYFAVSVCLVHKNKVVAAVVNTPALRETFWAEEKKGAFLED---------------FRSRHIKMRMKSHEGSLIDVSGNLLNKLLPGNSNIRSVGSTVLGFTYLAAGRYSGIVYSGVNKYKALLGRLLLQESAGRLTEDNGFIIAGDVKLT
3LV0 Chain:A ((8-238))
----SAVMNVMVQAAMKAGRSLVRDYGEVQNLQVSLKGPADYVSQADRKAEKIIFNELSKARPKFGFLMEESEEIIGEDSQHRFIVDPLDGTTNFLHGIPFFAVSIALESQGKIVAGVIYNPINDELFTAERGSGAFFNDRRCRVSARRRLEDCVIATGMPHL--PGHGTYLIE-----LRNVMAEVSGIRRFGTAALDLAYVAAGRTDGFWEDNLQIWDMAAGILMVREAGGFVTDKEGGNDIFRKKNI
General information:
TITO was launched using:
RESULT:
Template:
3LV0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120456 for 1748 contacts (-68.9/contact) +
2D Compatibility (PS) -22455 + (NN) -4276 + (LL) 752
1D Compatibility (HY) -15200 + (ID) 3150
Total energy: -164785.0 ( -94.27 by residue)
QMean score : 0.402
(partial model without unconserved sides chains):
PDB file :
Tito_3LV0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LV0-query.scw
PDB file :
Tito_Scwrl_3LV0.pdb
: