Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNGTVNKVILVGNLGRNPEIRTMQNGKEMANFSIATSEGWTDKFSGVRSEKTEWHNIVIFSEGLVKVVKDFVRKGSKVYIEGSLKTRKWTDQNGSERYTTEVVLQNFNGTLTLLDSRNNAASSDYKSNEYKQDETGQKDQYENFDSEVKEELIDDEIPF
1EQQ Chain:A ((2-115))
-ASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGK-LAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVV-NVGGTMQMLGG-------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1EQQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24359 for 724 contacts (-33.6/contact) +
2D Compatibility (PS) -12301 + (NN) -3164 + (LL) 2056
1D Compatibility (HY) -12000 + (ID) 3250
Total energy: -53018.0 ( -73.23 by residue)
QMean score : 0.400
(partial model without unconserved sides chains):
PDB file :
Tito_1EQQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EQQ-query.scw
PDB file :
Tito_Scwrl_1EQQ.pdb
: