Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVDSHCHLIYFS-DDEIPEVISRAEQNGVKILHNICVNADDVPKLLKIASSYNQVYSSIGIHPLDA-SVENGKCMHADELVELIKNQKVVSIGETGLDFYKSNNKSN-QKKSFASHIEAARITGLPLVIHTRGVDSEVIDMLKSEMKNGPFNGVMHCFTSSKELAHQSIDLGLYISFSGIITFKNASLLRRIAQDVPRERVLVETDAPYLSPEPHRGKKNEPAMVKYVVDCLAELWSASPDKVAEVTTNNFFRLFTKLKLKEIL
1J6O Chain:A ((1-254))
--VDTHAHLHFHQFDDDRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSKTSDRIFCSVGVHPHDAKEVPEDFIEH---LEKFAKDEKVVAIGETGLDFFRNISPAEVQKRVFVEQIELAGKLNLPLVVHIRDAYSEAYEILRTESLPEK-RGVIHAFSSDYEWAKKFIDLGFLLGIGGPVTYPKNEALREVVKRVGLEYIVLETDCPFLPPQPFRGKRNEPKYLKYVVETISQVLGVPEAKVDEATTENARRIFLEVKE----
General information:
TITO was launched using:
RESULT:
Template:
1J6O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145502 for 2215 contacts (-65.7/contact) +
2D Compatibility (PS) -26793 + (NN) -11687 + (LL) 1264
1D Compatibility (HY) -17600 + (ID) 4900
Total energy: -205218.0 ( -92.65 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_1J6O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J6O-query.scw
PDB file :
Tito_Scwrl_1J6O.pdb
: