Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSLINPKVSAMFFDQIVTATDHNIAWEKIQNLLYNLYGEATYNSWLSSLKFVSSSNGEVLLSVPTRFIKEWITVHYMEKILLLWQNEDKSICSIDIQVTEEKNSSSSIISKNKEESVNNLGSPLDPRFTFDNFVVGKPNELAFTAAKRVAESIDPIPGS-NPLFLYGGVGLGKTHLMHAIAWHIV-NSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRS-VDVLMVDDVQFISGKDSTQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKVEQMNMYVPQDVLEFLARNIRSNIRELEGALNK-VAHTSLIGRSMTVESASETLMDLLRSNHRSITIAEIQKKIAEFFNIKVTDMHSNRRLRSLVRPRQIAMYFAKKFTHKSLPDIGRSFGGRDHATVIHAVKQIENFIKTDSEFADEINQLRKMFK |
2Z4S Chain:A ((96-335)) | -------------------------------------------------------------------------------------------------------------------------TPLNPDYTFENFVVGPGNSFAYHAALEVAKH----PGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLR--VMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDFIKP------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2Z4S.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -149596 for 1879 contacts (-79.6/contact) +
2D Compatibility (PS) -26647 + (NN) -19632 + (LL) 17140
1D Compatibility (HY) -22800 + (ID) 4950
Total energy: -206485.0 ( -109.89 by residue)
QMean score : 0.593
|
|
|