Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYRIVSSNILKYKNCEPKIDESAFIAGDSHIVGKVEIGREASIWFNCVIRGDIGSIKIGDGTNIQDGTVIHV----DRNPGG-DTIIGDMVTVGHFCMLHACTVHDKALIGMGSIVMDHAIVESEAMVAAGSLVTHRKVIKSGEMWAGRPAKFFKKISDEEVKYITQSAQNYIMLMKKYKN
3R1W Chain:A ((10-182))
------TSVRTYQGISPKLGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGCTIGNRVLIGMKSMIMDGAIVEDEVIVAAGATVSPGKVLESGFVYMGTPAKKVRPITEKERSFFTYGAGNYVRLKDKHLA
General information:
TITO was launched using:
RESULT:
Template:
3R1W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144392 for 1400 contacts (-103.1/contact) +
2D Compatibility (PS) -18800 + (NN) -6567 + (LL) 768
1D Compatibility (HY) -15600 + (ID) 3900
Total energy: -188491.0 ( -134.64 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_3R1W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R1W-query.scw
PDB file :
Tito_Scwrl_3R1W.pdb
: