Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIQIEETPNPNTLKFLPGFAILNERETADFSNPDEIKNSKLAADLFQIEHVIRVFFGHDFISVTK-SDGISWDILKVEILTTVMDHFTSGGKALDRKGVNDNNIPDEEFFDENDIEIVNRIKELMENYIKPAVAQDGGDIKFRGYKDGIVYVELQGACSGCPSAAITLKQGVQNMLCYHIPEVSGIETTL
2LTM Chain:A ((11-100))
MFIQTQDTPNPNSLKFIPGKPVLETR-TMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDSITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEE---------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2LTM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71569 for 598 contacts (-119.7/contact) +
2D Compatibility (PS) -9827 + (NN) -7208 + (LL) 5200
1D Compatibility (HY) -8800 + (ID) 2350
Total energy: -94554.0 ( -158.12 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_2LTM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LTM-query.scw
PDB file :
Tito_Scwrl_2LTM.pdb
: