Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNAKRKVVIYIKQYCPFCKRAKELLDEKGVKYEEIDVFKNSDLFSNIKLKYNVRTVPQIFIADKNGNYVHHIAGCDKLMDLEREGKLDDMLSTNYDKTDVTTYTSNSDEYEEYVASHDDFM
2KHP Chain:A ((8-89))
-------VIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFIGSV------HVGGCDDLYALEDEGKLDSLLKTGKLI------------------------
General information:
TITO was launched using:
RESULT:
Template:
2KHP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54799 for 586 contacts (-93.5/contact) +
2D Compatibility (PS) -9171 + (NN) -3396 + (LL) 1616
1D Compatibility (HY) -6400 + (ID) 1850
Total energy: -74000.0 ( -126.28 by residue)
QMean score : 0.734
(partial model without unconserved sides chains):
PDB file :
Tito_2KHP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KHP-query.scw
PDB file :
Tito_Scwrl_2KHP.pdb
: