Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLAKGKEMGKLEGKIALIAGASGGMGSAVAKRFVREGAYVILISRSIDNLKQLYDEIEKLDEFKEGSVKLIQLDLL--DFENVKILANMIESLKLSESGALDILVACTGILGKLNLVHDCELEELQNVMNTNFTANWYLLKNLDPVLKKSNSGRVIFMTSEVTLSPSSYPYWVPYAASKAALEIMVKIYASETKHTKLCVNAVYSEGPVDSEMYKQAFPGKDISELILPNKLTDKFVELASEDCSISGQVLPLSKSLE
3G1T Chain:A ((12-234))
-----------LQNRIILVTGASDGIGREAALTYARYGATVILLGRNEEKLRRVAQHIA--DE-QHVQPQWFTLDLLTCTAEECRQVADRIA----AHYPRLDGVLHNAGLLGEIGPMSEQDPQIWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRA--NWGAYATSKFATEGMMQVLADEYQNRSLRVNCI-NPGGTRTSMRASAFPTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQP--
General information:
TITO was launched using:
RESULT:
Template:
3G1T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141888 for 1782 contacts (-79.6/contact) +
2D Compatibility (PS) -24208 + (NN) -14704 + (LL) 1444
1D Compatibility (HY) -12400 + (ID) 3500
Total energy: -195256.0 ( -109.57 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_3G1T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G1T-query.scw
PDB file :
Tito_Scwrl_3G1T.pdb
: