Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSSQSPKRMYGTGNNFVIIDSRSINNL--NWNYREIANQN---GCDQIIVITNSSAADCFMH--IYNADGGEVEMCGNAARCVGYLIMSEKSTEYATIELVNKRILECFKV-GGRSIKVNMGKPLFKWHEIPLSA----KCDPLHLPIELEMLKDPVAVNIGNPHMVFFVDNISEIPLQSLGPKLEKHTLFPKKVNVNIAQVEKSGEISLRVWERGTGITASCGSAACAALIASVLRGYLITRQTSVNLPGGKLLIEW---PDNIFMTGDIGFL |
| 1GQZ Chain:A ((5-263)) | -------KMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLCG---AVSMGNPHCVVQVDDIQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQG-LLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHI |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GQZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -187225 for 2074 contacts (-90.3/contact) +
2D Compatibility (PS) -26778 + (NN) -8879 + (LL) 236
1D Compatibility (HY) -20800 + (ID) 4700
Total energy: -248146.0 ( -119.65 by residue)
QMean score : 0.444
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