Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKDLILLGIASVIGA---LTGLWLSFTALSHLI--IGGVIAAIPVMLLSAYYICDSIRKGKFSKKDLFESYLCMLHKCHDWSWSCCNRNCFFPGAMIGIGYATLAGGAIAPIIAIFPMYSIIVPIAEKVNEYIIFPIIEYFSLKGKEHEQV
3B8E Chain:A ((269-330))
-----IITGVAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQENL
General information:
TITO was launched using:
RESULT:
Template:
3B8E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18731 for 243 contacts (-77.1/contact) +
2D Compatibility (PS) -5454 + (NN) 3628 + (LL) 296
1D Compatibility (HY) -8000 + (ID) 850
Total energy: -29111.0 ( -119.80 by residue)
QMean score : -0.089
(partial model without unconserved sides chains):
PDB file :
Tito_3B8E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3B8E-query.scw
PDB file :
Tito_Scwrl_3B8E.pdb
: