Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIERTLSILKPDTVKNNIIGNINSYIEKSGLRIIAQKMMLLTKKQAELFYAIHKDRPFFGGLVEFMTSGPVIVQVLVGENAISKYRQIMGATDPKQADKGTIRGDFADDVNENRVHGSDSLENAHKEIAFFFAECELV
3VGV Chain:A ((2-139))
-ATERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEH----FFGDLVGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAEAGTIRADYAQSIDANAVHGSDSPESAAREIAYFFAESEIC
General information:
TITO was launched using:
RESULT:
Template:
3VGV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56233 for 1039 contacts (-54.1/contact) +
2D Compatibility (PS) -14088 + (NN) -416 + (LL) 156
1D Compatibility (HY) -12400 + (ID) 4200
Total energy: -87181.0 ( -83.91 by residue)
QMean score : 0.386
(partial model without unconserved sides chains):
PDB file :
Tito_3VGV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VGV-query.scw
PDB file :
Tito_Scwrl_3VGV.pdb
: