Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLKIATWNVNSIRKRVDQLCSFIVDDQIDIILLQEIKCTEEQFPYVEIEKLGYECIVYGEVARNGVCVLSKH-PILEKFKIDIVEGYQEARYIECLIKHNNQKMRVVSIYVPNGQSLGSHV-FEYKLKFLDNLYERMDNLLKNEELIVIAGDYNVAPDEIDVF------DPTLLNGQVCFHIKEREKLKAILNLGFKDAFRMSHP-NLQQFSWWRYQGNSLRNNQGMRIDHMLLSPQAVDKLGICYIDDRLRKLENPSDHTPIVSIMEW |
| 1AKO Chain:A ((1-262)) | -MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYEIRSMEKPSDHAPVWATFRR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1AKO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -134646 for 2079 contacts (-64.8/contact) +
2D Compatibility (PS) -27189 + (NN) -13211 + (LL) 208
1D Compatibility (HY) -14000 + (ID) 4000
Total energy: -192838.0 ( -92.76 by residue)
QMean score : 0.450
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