Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNINIKNLVHAFSKLPSLGPSSSRRLVIHLLQNKEKVMLPLASSIKELADLIIECKVCGNLDTQSPCSICTNPKRDTKLMCVVEELGDLWAFEKGSIYSGMYHVLGGRLSAINGIGPEKLNLDNIPKRVTEFKIEEVIIAINPTLEGQVTVQYIIESLKNLDVKVSRLACGIPMGGEIDYLDEGTLKAALTSRQEYESNIK
2V1C Chain:A ((6-194))
---SLVSLIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLASALLEAKRDLHVCPICFNITDAEKCDVCADPSRDQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGM--EVILATGTTVEGDATALYLQRLLEPLGAAISRIAYGVPVGGSLEYTDEVTLGRALTGRQTVSKPQ-
General information:
TITO was launched using:
RESULT:
Template:
2V1C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101632 for 1226 contacts (-82.9/contact) +
2D Compatibility (PS) -20366 + (NN) -9975 + (LL) 744
1D Compatibility (HY) -16400 + (ID) 3850
Total energy: -151479.0 ( -123.56 by residue)
QMean score : 0.404
(partial model without unconserved sides chains):
PDB file :
Tito_2V1C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2V1C-query.scw
PDB file :
Tito_Scwrl_2V1C.pdb
: