Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSNYFALFKIEPAFNISLDELEKKYIELSKTDINER-----------QSQNMENINKAYQVLKSPLKRAEHLLNLFGVRSQEDQHNFE---ILNESMEIREYLLDCNNLQLASGMIDEKIKDCIKNLTNNFAVKNFDEAAMQVLRLKYLYKSFEEIKNETNSNF
1FPO Chain:A ((2-102))
---DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLRSSAEQ
General information:
TITO was launched using:
RESULT:
Template:
1FPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13675 for 462 contacts (-29.6/contact) +
2D Compatibility (PS) -9300 + (NN) -6215 + (LL) 152
1D Compatibility (HY) -6800 + (ID) 1450
Total energy: -37288.0 ( -80.71 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_1FPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FPO-query.scw
PDB file :
Tito_Scwrl_1FPO.pdb
: