Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLIRIGTRGSSLAIAQALEAKQKLLDLFSSLSVEIIKIKTSGDKYANANLAEIGGKGLFIKEIETELIKSNIDMAVHSLKDVPAFFSKDLTIPCILERLSPYDTFISNKYKSLKSLPQQAIIATSSIRRKVQLLNFRPDLNIVPLRGNVTTR---LQNQSFDGIILAEAGLIRLKKDYLITEVLSPKTMLSAVGQGAICIQCRKNDIKIIDLLEKINNNKSFIRVKSERSFMKTVNGSCFTPLAALAKYV-SENVLHLYCMLADKKNIYFTERTSFVEDAEKMGMDAGLELKSKCL |
1GTK Chain:A ((5-294)) | -VLRIATRQSPLALWQAHYVKDKLMASHPGLVVELVPMV-----------------GLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRLEGGCQVPIGSYAELIDGEIWLRALVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GTK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -132660 for 2262 contacts (-58.6/contact) +
2D Compatibility (PS) -29253 + (NN) -14275 + (LL) 616
1D Compatibility (HY) -18400 + (ID) 5800
Total energy: -199772.0 ( -88.32 by residue)
QMean score : 0.410
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