Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPIICALDTQDLNEAISLANTLRDKVGMIKLGLEFFAAHGPSGVREVAKCNVPTFLDLKLHDIPNTVAKTVEAIKVLNIEILTLHISGGTKML---EEALSIVKDTKTKLIGVTVLTSMSNEDLSELGIAREVKSQVILFAKLAKKVGLHGIVCSALEAQEVYQECGKDFKIITSGIR-VGFGHDDQKRTATPKEAINSGADYIVIGRPITKSNSPANSAELILKSLS
3UWQ Chain:A ((30-254))
---VIVALDYDNLADALAFVDKIDPSTCRLKVGKEMFTLFGPDFVRELHKRGFSVFLDLKFHDIPNTCSKAVKAAAELGVWMVNVHASGGERMMAASREILEPYGKERPLLIGVTVLTSMESADLQGIGILSAPQDHVLRLATLTKNAGLDGVVCSAQEASLLKQHLGREFKLVTPGIRPA-------RRIMTPAQAIASGSDYLVIGRPITQAAHPEVVLEEINSSL-
General information:
TITO was launched using:
RESULT:
Template:
3UWQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161356 for 1701 contacts (-94.9/contact) +
2D Compatibility (PS) -23040 + (NN) -7387 + (LL) -240
1D Compatibility (HY) -18400 + (ID) 4700
Total energy: -215123.0 ( -126.47 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_3UWQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UWQ-query.scw
PDB file :
Tito_Scwrl_3UWQ.pdb
: