Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNKTYEISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTSKNFINKVYKGGFNSLVLNFVEKEDLSQDEIEELRNILNKK
1SAX Chain:A ((3-122))
--NKTYEISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTSKNFINKVYKGGFNSLVLNFVEKEDLSQDEIEELRNILNK-
General information:
TITO was launched using:
RESULT:
Template:
1SAX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48348 for 726 contacts (-66.6/contact) +
2D Compatibility (PS) -12635 + (NN) -2571 + (LL) 196
1D Compatibility (HY) -18000 + (ID) 6000
Total energy: -87358.0 ( -120.33 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_1SAX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SAX-query.scw
PDB file :
Tito_Scwrl_1SAX.pdb
: