Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTTTQELKQYITRLFQLSNNETWECEALEEAAENILPERFINDSPLAHLTLETYTYYNNELHDLSIYPFLMYANNQLISVGYL--NHFDMDFLYLTDTKNTIIDERHLLREGGTHHE
2KCD Chain:A ((6-111))
------QLKHYITNLFNLPRDEKWECESIEEVADDILPDQYVRLGPLSNKILQTNTYYSDTLHKSNIYPFILYYQKQLIAIGFIDENH-DMDFLYLHNTVMPLLDQRYLLTGG-----
General information:
TITO was launched using:
RESULT:
Template:
2KCD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67362 for 696 contacts (-96.8/contact) +
2D Compatibility (PS) -10685 + (NN) 1922 + (LL) 752
1D Compatibility (HY) -14000 + (ID) 2600
Total energy: -91973.0 ( -132.15 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_2KCD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KCD-query.scw
PDB file :
Tito_Scwrl_2KCD.pdb
: