Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQGWWFPVMASAFLIFTIVIMFIAGTGQYGLGEKGTVDAFVNGASSLVGVSLIIGLARGINLVLNKGMISDTILHFSSSIVQHMSGPLFIIVLLFIFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMATLQMLNVRYSHWLRFVWPVVAFVLIFGGGLLITQVLIYS
4LNB Chain:B ((332-388))
-------------------------------------------------------------------------------------------------------------------------------VPRYMNIATLLPWLSARQYAPEGGFSGRTNKLVDGCYSHWVGNCWPLVQAAL---------------
General information:
TITO was launched using:
RESULT:
Template:
4LNB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43127 for 280 contacts (-154.0/contact) +
2D Compatibility (PS) -4837 + (NN) 3435 + (LL) 10756
1D Compatibility (HY) -1600 + (ID) 700
Total energy: -36073.0 ( -128.83 by residue)
QMean score : -0.158
(partial model without unconserved sides chains):
PDB file :
Tito_4LNB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LNB-query.scw
PDB file :
Tito_Scwrl_4LNB.pdb
: