Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATKKDVHDLFLNHVNSNAVKTRKMMGEYIIYYDSVVIGGLYDNRLLVKATKSVRHQLQDNTLVSPYPGAKEMILIPDITEAINLTNLFELIKNDLKN
3P4L Chain:A ((986-1028))
-----------------------KITG-YIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPY-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3P4L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6333 for 180 contacts (-35.2/contact) +
2D Compatibility (PS) -4447 + (NN) -335 + (LL) 3936
1D Compatibility (HY) -2400 + (ID) 800
Total energy: -10379.0 ( -57.66 by residue)
QMean score : 0.075
(partial model without unconserved sides chains):
PDB file :
Tito_3P4L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P4L-query.scw
PDB file :
Tito_Scwrl_3P4L.pdb
: