Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDMLISLVIPVFALLVIGGIIWVIIEGIVHISKKNKAIDNFLNQVNKVSETYKFATAFLFLILATAGIS--QFYLYYIVSAFLFWLVILTFGIAGIIFLMPYGLCFLPLYKQKKKKQTFKKYMVYTTIGLSICLGLSLVLVHTTKIYMDEGGVRYYYGSFVMKQAGGYAYLALAVLSTLLIVAKKATNKNKEIETVDNTNITER
2ZQP Chain:Y ((77-176))
--------IMPYITAAIIMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVAGIALLL--------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2ZQP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68710 for 546 contacts (-125.8/contact) +
2D Compatibility (PS) -8840 + (NN) 1930 + (LL) 8884
1D Compatibility (HY) -7600 + (ID) 1050
Total energy: -75386.0 ( -138.07 by residue)
QMean score : 0.145
(partial model without unconserved sides chains):
PDB file :
Tito_2ZQP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZQP-query.scw
PDB file :
Tito_Scwrl_2ZQP.pdb
: