Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKFNNWILNAISGSQTDKNETTEELKGAKFIILYAYSMLVLLALVISNIFI--HILEPKLSITTQIIIVLILIEALIGLRFLKAYDVKRGKD---KENKKNSKDFVKLKSILVAILFTSLALTAGTVADIYGFTDLGNTRSDLIVWSIGGIIFGLVCYTMEDKK
3LRB Chain:A ((116-261))
------------------------------FPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWF-RGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAA----GVVKNPKRNVPIATIGGVLIAAVCYVL----
General information:
TITO was launched using:
RESULT:
Template:
3LRB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42121 for 594 contacts (-70.9/contact) +
2D Compatibility (PS) -12103 + (NN) 712 + (LL) 2172
1D Compatibility (HY) -11200 + (ID) 1400
Total energy: -63940.0 ( -107.64 by residue)
QMean score : -0.045
(partial model without unconserved sides chains):
PDB file :
Tito_3LRB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LRB-query.scw
PDB file :
Tito_Scwrl_3LRB.pdb
: