Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRIVQPVIEQLKAQSHPVCHYIYDLVGLEHHLQHITSSLPSNCQMY-YAMKANSERTILDTISQYVEGFEVASQGEIAKGLAFK-PANHIIFGGPGKTDEELRYAVSEGVQRIHVESMHELQRLNAILEDEDKTQHILLRVNLAGPFPNATLH----MAGRPTQFGISEDEVDDVIEAALVMPNIHLDGFHFHSISNNLDSNLHVDVVKLYFKKAKSWSEKHRFPLKHINLGGGIGVNYADLTSQFEWDNFVENFKTLIVEQEM-EDVTLNFECGRFIVAHIGYYVTEVLDIKKVHGAWYAILRGGTQQFRLPVSWQHNHPFEIYRYKDNPYSFEKVSISRQDTTLVGQLCTPKDVFAREVQIDAISTGDVIVFKYAGAYGWSISHHDFLSHPHPEFIYLTQTKEDE |
| 3N2B Chain:A ((55-403)) | --------------------YVYSRATLERHWHAFDKSVGDYPHLICYAVKANSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPISLRIN---PDVDAKTHPYISTGLRDNKFGITFDRAAQVYRLAHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEG-IHIRHLDVGGGLGVVY----PQPS-----EYAKALLDRLERHRDLELIFEPGRAIAANAGVLVTKVEFLKHT--KNFAIIDAAMNDLIR----QDIIPLR-------PRQGEA-----QTYDLVGPVCETSDFLGKDRDL-VLQEGDLLAVRSSGAYGFTMSSN-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3N2B.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -163501 for 2693 contacts (-60.7/contact) +
2D Compatibility (PS) -34545 + (NN) -8854 + (LL) 4796
1D Compatibility (HY) -18000 + (ID) 5100
Total energy: -225204.0 ( -83.63 by residue)
QMean score : 0.441
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