Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSDSLKENIIYQGLYQLIRTMTPLITIPIISRAFGPSGVGIVSFSFNIVQYFLMIASVGVQLYFNRVIAKSVNDKRQLSQQFWDIFVSKLFLALTVFAMYMVVITIFIDDYYLIFLLQGIYIIGAALDISWFYAGTEKFKIPSLSNIVASGIVLSVVVIFVKDQSDLSLYVFTIAIVTVLNQLPLFIYLKRYISFVSVNWIHVWQLFRSSLAYLLPNGQLNLYTSISCVVLGLVGTYQQVGIFSNAFNILTVAIIMINTFDLVMIPRITKMSIQ-QSHSLTKTLANNMNIQLILTIPMVFGLIAIMPSFYLWFFG---EEFASTVPLMTILAILVLIIPLNMLISRQYLLIVNKIRLYNASITIGAVMNLVLCLVLIY--FYGIYGAAIARLITEFILLIWRFVDITKINVKLNIVSTIQCVIAAVMMFIVLGVVNHYLPPTMYATLLLIAIGIVVYLLLMMTMKNQYVWQILRHLRHKTI |
| 3W4T Chain:A ((13-216)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RGDPKKAIVRLSIAMMIGMSVQTLYNLADGIWVSG-LGPESLAAVGLFFPVFMGIIALAAGLGVGTSSAIARRIGARDKEGADNVAVHSLILSLILGVTITITMLPAIDSLFRS-MGAKGEAVELAIEYARVLLAGAFIIVFNNVGN-GILRGEGDANRAMLAMVLGSGLNIVLDPIFIYTLGFGVVGAAYATLLSMVVTSL--------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3W4T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -192279 for 1468 contacts (-131.0/contact) +
2D Compatibility (PS) -19862 + (NN) -3958 + (LL) 28832
1D Compatibility (HY) -9600 + (ID) 1550
Total energy: -198417.0 ( -135.16 by residue)
QMean score : 0.221
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