Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSTPHIKPMNDVEIAETVLLPGDPLRAKFIAETYLDDVEQFNTVRNMFGFTGTYKGKKVSVMGSGMGMPSIGIYSYELIHTFGCKKLIRVGSCGAMQENIDLYDVIIAQGASTDSNYVQQYQLPG-HFAPIASYQLLEKAVETARDKGVRHHVGNVLSSDIFYNADTTASERWMRMGILGVEMESAALYMNAIYAGVEALGVFTVSDHLIHETSTTPEERERAFTDMIEIALSLV
3UAW Chain:A ((11-229))
-------------EIAESILLPGDPLRAKYIAETFLEDVTCYNNVRGMLGFTGTYKGKRVSVQGTGMGVPSISIYVNELIQSYGVKNLIRVGTCGAIQKDVKVRDVIIAMTACTDSN-MNRLTFPGFDFAPAANFDLLKKAYDAGTEKGLHVRVGNVLTADVFYRESMDMVKKLGDYGVLAVEMETTALYTLAAKYGVNALSVLTVSDHIFTGEETTSEERQTTFNEMIEIAL---
General information:
TITO was launched using:
RESULT:
Template:
3UAW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158872 for 1949 contacts (-81.5/contact) +
2D Compatibility (PS) -23537 + (NN) -5419 + (LL) 1004
1D Compatibility (HY) -25600 + (ID) 6100
Total energy: -218524.0 ( -112.12 by residue)
QMean score : 0.518
(partial model without unconserved sides chains):
PDB file :
Tito_3UAW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UAW-query.scw
PDB file :
Tito_Scwrl_3UAW.pdb
: