Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKKENTTTTLFVYEKPKSTISEKFRGIRSNIMFSKANGEVKRLLVTSEKPGAGKSTVVSNVAITYAQAGYKTLVIDGDMCKPTQNYIFNEQNNNGLSSLIIGRTTMSEAITSTEIENLDLLTAGPVPPNPSELIGSERFKELVDLFNKRYDIIIVDTPPVNTVTDAQLYARAIKDSLLVIDSEKNDKNEVKKAKALMEKAGSNILGVILNKTKVDKSSSYYHYYGDE
2VED Chain:A ((42-267))
MTNTRRSTSSLIVHEQPKSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGMSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIEDLDVLTSGPIPPNPSELITSRAFANLYDTLLMNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDKSASYYAYYG--
General information:
TITO was launched using:
RESULT:
Template:
2VED.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67434 for 1910 contacts (-35.3/contact) +
2D Compatibility (PS) -24870 + (NN) -16007 + (LL) 28
1D Compatibility (HY) -24800 + (ID) 6450
Total energy: -139533.0 ( -73.05 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_2VED.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VED-query.scw
PDB file :
Tito_Scwrl_2VED.pdb
: