Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFMAENRLQLQKGSAEETIERFYNRQGIETIEGFQQMFVTKTLNTEDTDEVKILTIWESEDSFNNWLNSDVFKEAHKNVRLKSDDDGQQSPILSNKVFKYDIGYHYQK
3LGM Chain:A ((3-110))
MFMAENRLQLQKGSAEETIERFYNRQGIETIEGFQQMFVTKTLNTEDTDEVKILTIWESEDSFNNWLNSDVFKEAHKNVRLKSDDDGQQSPILSNKVFKYDIGYHYQK
General information:
TITO was launched using:
RESULT:
Template:
3LGM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14416 for 686 contacts (-21.0/contact) +
2D Compatibility (PS) -11640 + (NN) -2422 + (LL) 0
1D Compatibility (HY) -14000 + (ID) 5400
Total energy: -47878.0 ( -69.79 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_3LGM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LGM-query.scw
PDB file :
Tito_Scwrl_3LGM.pdb
: