Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTRPTNNKFILPIITFIIFLGIWEMVIIIGHYQPVLLPGP---ALVGKSIWTFIVTGEIFQHL--AISLWRFVAGFVVALLVAIPLGFL-LGRNRWLYNAIEPLFQLIRPISPIAWAPFVVLWFGIGSLPAIAIIFIAAFFPIVFNTIKGVRDIEPQYLKIAANLNLTGWSLYRNILFPGAFKQIMAGIHMAVGTSWIFLVSGEMIGAQSGLGFLIVDARNMLNLEDVLAAIFFIGLFGFIIDRFISYIEQFILRRFGE |
2YEV Chain:A ((378-454)) | -----------------------DSYFVVAHFHNVLMAGSGFGAFAGLYYWWPKMTGRMYDERLGRLHFWLFLVGYLLTFLPQYALGYLGMPRRYYTYNA--------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YEV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -33651 for 361 contacts (-93.2/contact) +
2D Compatibility (PS) -6799 + (NN) 109 + (LL) 15952
1D Compatibility (HY) -9600 + (ID) 1000
Total energy: -34989.0 ( -96.92 by residue)
QMean score : 0.008
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