Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDYAPHTAENVVQNANKLIDVFRKNNGFIAFVRVNFYDGKDVLQPNAMISL---------PPKEGDDYSRFHHLLDKRDDDFVIDKRHFSAFVGTDLDLQLRRRGIDTIVLGGVATHIGVDTTARDAYQLNYNQFFVTDMMSAQNETLHQFPIDNVFPLMGQTITTNDFLNILN
3TXY Chain:A ((28-188))
LPMVPQSGGDVVAKTAELANAFRARKLPVIFVHTSY-------QPDGAVALKVKTDVPPSPPNLDPEWSAFAPALGVQPLDVVVTKHQWGAFTGTDLDVQLRRRGITDIVLTGIATNIGVESTAREAYENNYNVVVVSDAVSTWSTDAQTFALTQIFPKLGQVATAAD------
General information:
TITO was launched using:
RESULT:
Template:
3TXY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67155 for 1102 contacts (-60.9/contact) +
2D Compatibility (PS) -16518 + (NN) -8526 + (LL) 728
1D Compatibility (HY) -11600 + (ID) 3000
Total energy: -106071.0 ( -96.25 by residue)
QMean score : 0.386
(partial model without unconserved sides chains):
PDB file :
Tito_3TXY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TXY-query.scw
PDB file :
Tito_Scwrl_3TXY.pdb
: