Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRRKRKWLIVICVLLVLITISQILKHFNYGTESKEAYNTYTVEKERQLDLQGKAYPREVKTYYKNNQVGTYLGVQVADGQTVKKGDMLINYKINSNKRQQLVDKINDTQHIITEVYLNITKGLNNREIQKKLIEYKQTLYEAQQQLYQYDSQN-RDS-MYASFDGKI---MIKNIDNDSDNQPILYLI-SKESHIKTSVTEFDLNKVKKGDKVNLSITSTGKTGAGIIKQISELPISYEENLSLHENDALHLPESNNDGELANSKSI-SASPIFKSNNNSELSKYGVIIDDLSLPIRAGYSLEIKVPLNAIKIPKSVLTKGNNVFIVNKNSIVEKRNIRIKRINGD--IIVEKGLKPGDKLIKQPKSTMNDGDKVEISS |
4L8J Chain:A ((43-325)) | --------------------------------------------------------------------GQIINLPVVEGQRVKKGQLIAAIDPRDISLQYAADKAA-YETAAAQVERN-KRLLGRQAISLQEYEISVANYQKAKSAYELSTNNMRDTKLLAPFDGSIETRLVENYQRVNSGEGIVRLVNTRKLRIKFTVPDDYLYLLRAKDA---TFKVEFDTYKGTV-----FNARLEEYLDI-STDGTGIPVTIIIDDAAFDRTIYDVKPGFTCNIR--------LASDIAPFIEEKLM---NVPLSAVFGDSE--NKNTYVWIVKDNK-VNRREVTVYSPTGEANLLISKGLKPGETVVTAGVYQLVEGQRIK--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4L8J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 37791 for 1510 contacts (25.0/contact) +
2D Compatibility (PS) -29042 + (NN) -4032 + (LL) 8704
1D Compatibility (HY) -15600 + (ID) 3350
Total energy: -5529.0 ( -3.66 by residue)
QMean score : 0.239
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