Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKNDLLVMSVVYILTSVIMFYINGLSKQFFTYVVGFPIIYFGYICLVNLIKKRSRNN
3V42 Chain:A ((548-558))
----------------KLLKFWMTGLS-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3V42.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2821 for 32 contacts (-88.2/contact) +
2D Compatibility (PS) -1174 + (NN) -742 + (LL) 4228
1D Compatibility (HY) -2000 + (ID) 200
Total energy: -2709.0 ( -84.66 by residue)
QMean score : 0.088
(partial model without unconserved sides chains):
PDB file :
Tito_3V42.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V42-query.scw
PDB file :
Tito_Scwrl_3V42.pdb
: