Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKCIVGLGNIGKRFELTRHNIGFEVVDYILEKNNFSLDKQKFKGAYTIERMNGDKVLFIEPMTMMNLSGEAVAPIMDYYNVNPEDLIVLYDDLDLEQGQVRLRQKGSAGGHNGMKSIIKML-GTDQFKRIRIGVGRPTNGMTVPDYVLQRFSNDEMVTMEKVIEHAARAIEKFV------ETSRFDHVMNEFNGEVK
1RYN Chain:A ((6-191))
--LIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTNQFKSLLGTGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKK----RHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLV---------
General information:
TITO was launched using:
RESULT:
Template:
1RYN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128866 for 1420 contacts (-90.8/contact) +
2D Compatibility (PS) -18498 + (NN) -6221 + (LL) 516
1D Compatibility (HY) -16800 + (ID) 3250
Total energy: -173119.0 ( -121.91 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_1RYN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RYN-query.scw
PDB file :
Tito_Scwrl_1RYN.pdb
: