Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKRMRDDIKMVFEQDPAARSTLEVITTYAGLHAVWSHLIAHKLYNQ-KKYVAARAISQISRFFTGIEIHPGAKIGKRLFIDHGMGVVIGETCTIGDNVTIYQGVTLGGTGKERGKRHPDIGDNVLIAAGAKVLGNIKINSNVNIGANSVVLQSVPSYSTVVGIPGHIVKQDGVRVGKTFDHRHLPDPIYEQIKHLERQLEKTRNGEIQDDYII
1SSQ Chain:A ((80-241))
-------DIQAVRHRDPAVELWSTPLLYLKGFHAIQSYRITHYLWNQNRKSLALYLQNQISVAFD-VDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNPVPEYATAAGVPARIVS--------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1SSQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130906 for 1325 contacts (-98.8/contact) +
2D Compatibility (PS) -17076 + (NN) -5066 + (LL) 3324
1D Compatibility (HY) -12000 + (ID) 3950
Total energy: -165674.0 ( -125.04 by residue)
QMean score : 0.665
(partial model without unconserved sides chains):
PDB file :
Tito_1SSQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SSQ-query.scw
PDB file :
Tito_Scwrl_1SSQ.pdb
: