Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAITKINDCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKRITEANNEIEL
2FNP Chain:A ((103-224))
--ITKINDCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYISENKEKEYYFKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKRITEANNEIEL
General information:
TITO was launched using:
RESULT:
Template:
2FNP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55866 for 782 contacts (-71.4/contact) +
2D Compatibility (PS) -13032 + (NN) -6670 + (LL) 352
1D Compatibility (HY) -18400 + (ID) 6050
Total energy: -99666.0 ( -127.45 by residue)
QMean score : 0.640
(partial model without unconserved sides chains):
PDB file :
Tito_2FNP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FNP-query.scw
PDB file :
Tito_Scwrl_2FNP.pdb
: